Updating to errors on missing Application.cfc

I tried updating to via the Server Admin page. I am running Lucee 6 as a combined Server. I do have two context running on this box. This is a development box so not a major issue on the update but I have never seen this before.

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OS: Windows 10
Java Version: Java 11.2.22
Jetty Version: 10.0,16
Lucee Version: